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Sample GSM187562 Query DataSets for GSM187562
Status Public on Nov 22, 2018
Title DIUpo10pm.t15.r1
Sample type RNA
 
Source name Grape berry 14 weeks post flowering, collected at 10pm, rep 1
Organism Vitis vinifera
Characteristics Cabernet Sauvignon
Growth protocol Berries were collected from bunches on field grown plants
Extracted molecule total RNA
Extraction protocol The modified RNAeasy RNA extraction method (Qiagen)
Label biotin
Label protocol Affymetrix One Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit
 
Hybridization protocol Affymetrix Fluidics Station 450, Biotin/Streptavidin detection
Scan protocol The GeneChips were scanned using theGeneChip Scanner 3000
Description Deseeded grape berry 14 weeks post flowering
Data processing Data normalized using the GCRMA R package from Bioconductor
 
Submission date May 07, 2007
Last update date Nov 22, 2018
Contact name Mark Raymond Thomas
E-mail(s) [email protected]
Organization name CSIRO
Department Plant Industry
Street address PO Box 350
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
 
Platform ID GPL1320
Series (1)
GSE7751 Analysis of gene expression in grape berries due to diurnal effects (DIU_06).

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal intensities

Data table
ID_REF VALUE
1606368_s_at 14.00032513
1606427_at 9.053565898
1606428_at 3.731799403
1606429_at 2.704724277
1606430_at 9.30452627
1606431_at 9.985824746
1606432_at 8.525544177
1606433_at 10.38255155
1606434_at 9.641136625
1606435_at 9.785581335
1606436_s_at 13.43170142
1606437_at 10.23766759
1606438_at 9.330991931
1606439_s_at 11.04986065
1606440_at 2.259581698
1606441_at 2.885869066
1606442_at 11.79701904
1606443_at 3.525512476
1606444_at 7.354259512
1606445_a_at 6.596584006

Total number of rows: 16602

Table truncated, full table size 376 Kbytes.




Supplementary file Size Download File type/resource
GSM187562.CEL.gz 2.0 Mb (ftp)(http) CEL

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