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Sample GSM187486 Query DataSets for GSM187486
Status Public on Nov 22, 2018
Title BUD01AP1_06.ap.r1
Sample type RNA
 
Source name latent buds from green canes, apical shoot meristem
Organism Vitis vinifera
Characteristics Cabernet Sauvignon
Growth protocol green latent buds were collected from bunches on field grown plants
Extracted molecule total RNA
Extraction protocol The modified RNAeasy RNA extraction method (Qiagen)
Label biotin
Label protocol Affymetrix Two Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit
 
Hybridization protocol Affymetrix Fluidics Station 450, Biotin/Streptavidin detection
Scan protocol The GeneChips were scanned using theGeneChip Scanner 3000
Description pooled apical shoot meristems from several canes
Data processing Data normalized using the GCRMA R package from Bioconductor
 
Submission date May 07, 2007
Last update date Nov 22, 2018
Contact name Mark Raymond Thomas
E-mail(s) [email protected]
Organization name CSIRO
Department Plant Industry
Street address PO Box 350
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
 
Platform ID GPL1320
Series (1)
GSE7747 Timing of gene expression for inflorescence development and position of green latent buds on grapevine canes (BUD-06).

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal intensities

Data table
ID_REF VALUE
1606368_s_at 14.06184739
1606427_at 9.403214228
1606428_at 5.496989042
1606429_at 2.748741015
1606430_at 8.559767895
1606431_at 10.94255895
1606432_at 8.698534063
1606433_at 1.929602159
1606434_at 9.097843973
1606435_at 8.99139237
1606436_s_at 13.52106034
1606437_at 11.25052063
1606438_at 7.0207722
1606439_s_at 11.76192452
1606440_at 2.194473198
1606441_at 2.686344336
1606442_at 12.56551719
1606443_at 2.827955968
1606444_at 9.032633672
1606445_a_at 8.050780128

Total number of rows: 16602

Table truncated, full table size 376 Kbytes.




Supplementary file Size Download File type/resource
GSM187486.CEL.gz 2.3 Mb (ftp)(http) CEL

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