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Sample GSM187479 Query DataSets for GSM187479
Status Public on Nov 22, 2018
Title BUD01018_06.b9.r2
Sample type RNA
 
Source name latent buds from green canes, bud position 9
Organism Vitis vinifera
Characteristics Cabernet Sauvignon
Growth protocol green latent buds were collected from bunches on field grown plants
Extracted molecule total RNA
Extraction protocol The modified RNAeasy RNA extraction method (Qiagen)
Label biotin
Label protocol Affymetrix Two Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit
 
Hybridization protocol Affymetrix Fluidics Station 450, Biotin/Streptavidin detection
Scan protocol The GeneChips were scanned using theGeneChip Scanner 3000
Description pooled green latent buds from several canes
Data processing Data normalized using the GCRMA R package from Bioconductor
 
Submission date May 07, 2007
Last update date Nov 22, 2018
Contact name Mark Raymond Thomas
E-mail(s) [email protected]
Organization name CSIRO
Department Plant Industry
Street address PO Box 350
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
 
Platform ID GPL1320
Series (1)
GSE7747 Timing of gene expression for inflorescence development and position of green latent buds on grapevine canes (BUD-06).

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal intensities

Data table
ID_REF VALUE
1606368_s_at 14.38956481
1606427_at 10.05936322
1606428_at 6.650000262
1606429_at 2.758278133
1606430_at 8.84335139
1606431_at 10.92601554
1606432_at 8.47427179
1606433_at 1.971914149
1606434_at 9.436784248
1606435_at 11.50703682
1606436_s_at 13.87809962
1606437_at 11.3442383
1606438_at 7.561831285
1606439_s_at 12.2587589
1606440_at 2.26791666
1606441_at 2.806821572
1606442_at 12.76188821
1606443_at 2.89956844
1606444_at 9.748352407
1606445_a_at 8.666596546

Total number of rows: 16602

Table truncated, full table size 376 Kbytes.




Supplementary file Size Download File type/resource
GSM187479.CEL.gz 2.2 Mb (ftp)(http) CEL

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