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Sample GSM187467 Query DataSets for GSM187467
Status Public on Nov 22, 2018
Title BUD01006_06.b3.r2
Sample type RNA
 
Source name latent buds from green canes, bud position 3
Organism Vitis vinifera
Characteristics Cabernet Sauvignon
Growth protocol green latent buds were collected from bunches on field grown plants
Extracted molecule total RNA
Extraction protocol The modified RNAeasy RNA extraction method (Qiagen)
Label biotin
Label protocol Affymetrix Two Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit
 
Hybridization protocol Affymetrix Fluidics Station 450, Biotin/Streptavidin detection
Scan protocol The GeneChips were scanned using theGeneChip Scanner 3000
Description pooled green latent buds from several canes
Data processing Data normalized using the GCRMA R package from Bioconductor
 
Submission date May 07, 2007
Last update date Nov 22, 2018
Contact name Mark Raymond Thomas
E-mail(s) [email protected]
Organization name CSIRO
Department Plant Industry
Street address PO Box 350
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
 
Platform ID GPL1320
Series (1)
GSE7747 Timing of gene expression for inflorescence development and position of green latent buds on grapevine canes (BUD-06).

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal intensities

Data table
ID_REF VALUE
1606368_s_at 14.79817493
1606427_at 10.89391386
1606428_at 5.887007704
1606429_at 2.490291449
1606430_at 10.50495119
1606431_at 11.14136899
1606432_at 7.833800232
1606433_at 1.967037909
1606434_at 9.537964095
1606435_at 11.36647931
1606436_s_at 14.21836075
1606437_at 11.29185901
1606438_at 8.361141564
1606439_s_at 13.03033718
1606440_at 2.237590423
1606441_at 2.743137333
1606442_at 13.51558414
1606443_at 2.854495308
1606444_at 10.15583969
1606445_a_at 7.715217319

Total number of rows: 16602

Table truncated, full table size 376 Kbytes.




Supplementary file Size Download File type/resource
GSM187467.CEL.gz 2.2 Mb (ftp)(http) CEL

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