|
| Status |
Public on Nov 22, 2018 |
| Title |
CLAsp008_05.t3.rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Grape berry 2 weeks post flowering, spur pruned vines
|
| Organism |
Vitis vinifera |
| Characteristics |
Cabernet Sauvignon
|
| Treatment protocol |
Spur and machine pruning of vines
|
| Growth protocol |
Berries were collected from bunches on field grown plants
|
| Extracted molecule |
total RNA |
| Extraction protocol |
A modified RNAeasy RNA extraction method (Qiagen)
|
| Label |
biotin
|
| Label protocol |
Affymetrix One Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labelling kit
|
| |
|
| Hybridization protocol |
Affymetrix Fluidics Station 450, Biotin/Streptavidin detection
|
| Scan protocol |
The GeneChips were scanned using theGeneChip Scanner 3000
|
| Description |
Gene expression data from whole berries pooled from several bunches
|
| Data processing |
Data normalised using the GCRMA R package from Bioconductor
|
| |
|
| Submission date |
May 01, 2007 |
| Last update date |
Nov 22, 2018 |
| Contact name |
Mark Raymond Thomas |
| E-mail(s) |
[email protected]
|
| Organization name |
CSIRO
|
| Department |
Plant Industry
|
| Street address |
PO Box 350
|
| City |
Glen Osmond |
| State/province |
SA |
| ZIP/Postal code |
5064 |
| Country |
Australia |
| |
|
| Platform ID |
GPL1320 |
| Series (2) |
| GSE7680 |
Grape berry developmental series comparing pruning treatments from a vineyard in Clare Valley, South Australia (CLA-05) |
| GSE7681 |
Grape berry expression profiling: developmental series and treatment effects |
|
