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Sample GSM1847628 Query DataSets for GSM1847628
Status Public on Jan 01, 2016
Title PHH_HBV_12days_B
Sample type RNA
 
Source name PHH_HBV_12days_B
Organism Homo sapiens
Characteristics tissue: liver
cell type: primary human hepatocytes (PHH)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Data processing The data was preprocessed by Bioconductor lumi package (version 2.20.2). It was vst transformed and ssn normalized.
 
Submission date Aug 11, 2015
Last update date Jan 06, 2016
Contact name Hector Hernandez-Vargas
E-mail(s) [email protected]
Organization name Genomics Consulting
Street address 36 bis Rue de la Batterie
City Bron
State/province Rhone
ZIP/Postal code 69500
Country France
 
Platform ID GPL10558
Series (1)
GSE72068 Gene expression response to HBV infection in PHH

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 5.77167913257628 50 12.9155286380388 0.35714 20
ILMN_2055271 5.79081270639709 50.7 17.4108233004646 0.31299 22
ILMN_1736007 5.65132237095481 45.8 10.8098042535469 0.64416 23
ILMN_2383229 11.8073634420002 3204.8 1119.65290283373 0 26
ILMN_1806310 11.6267550659191 2835.9 1263.832 0 16
ILMN_1779670 6.13536135524646 65 14.9579778045029 0.00779 11
ILMN_1653355 5.84414447384472 52.7 16.0326073986735 0.20909 20
ILMN_1717783 5.42578483550687 38.8 13.5552589056794 0.94805 21
ILMN_1705025 5.85197970292869 53 14.9597411742316 0.2 19
ILMN_1814316 5.80970004524803 51.4 14.6362962528093 0.27013 28
ILMN_2359168 5.38696256083614 37.7 10.815 0.96623 25
ILMN_1731507 5.38338173842948 37.6 10.809152603234 0.97013 20
ILMN_1787689 5.6838109712294 46.9 17.0299977392835 0.56494 23
ILMN_3241953 6.53853649860407 86.6 21.9672075603614 0 33
ILMN_1745607 7.5533998780862 176.1 66.551669069979 0 19
ILMN_2136495 5.44996510643458 39.5 11.6077478866488 0.92727 19
ILMN_1668111 5.602743516898 44.2 13.8167906186639 0.72857 23
ILMN_2295559 5.76616626429855 49.8 17.2228489513205 0.37273 14
ILMN_1735045 7.4914739135848 168.7 35.9196453211888 0 30
ILMN_1680754 5.95020575095393 56.9 21.0773159581575 0.07532 17

Total number of rows: 47231

Table truncated, full table size 2776 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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