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| Status |
Public on Oct 01, 2007 |
| Title |
Kidney_Fe-NTA_3wk_2 |
| Sample type |
RNA |
| |
|
| Source name |
Rat kidney, Fe-NTA 3wk
|
| Organism |
Rattus norvegicus |
| Characteristics |
Wistar, male, intraperitoneal injection of Fe-NTA for 3 weeks, kidney
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Isogen (Nippon Gene Co. Ltd., Tokyo).
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
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| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
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| Description |
Original sample number: YL1-5
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| Data processing |
Affymetrix GCOS 1.0, scaled to 100
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| |
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| Submission date |
Apr 26, 2007 |
| Last update date |
Apr 30, 2007 |
| Contact name |
Shinya Toyokuni |
| E-mail(s) |
[email protected]
|
| Organization name |
Nagoya University
|
| Department |
Pathology
|
| Street address |
65 Tsuruma-Cho, Showa-Ku
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| City |
Nagoya |
| State/province |
Aichi |
| ZIP/Postal code |
466-8550 |
| Country |
Japan |
| |
|
| Platform ID |
GPL1355 |
| Series (1) |
| GSE7625 |
Transcriptome analysis of an oxidative stress-induced rat renal carcinogenesis model |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
GCOS-calculated Signal intensity, scaled to 100 |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
0.651691 |
A |
0.860518 |
| AFFX-BioB-M_at |
0.738725 |
A |
0.978098 |
| AFFX-BioB-3_at |
0.437038 |
A |
0.9273 |
| AFFX-BioC-5_at |
306.401 |
P |
5.16732e-05 |
| AFFX-BioC-3_at |
250.153 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
558.681 |
P |
5.16732e-05 |
| AFFX-BioDn-3_at |
1202.36 |
P |
5.16732e-05 |
| AFFX-CreX-5_at |
3524.87 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
3666.97 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
3.30182 |
A |
0.39692 |
| AFFX-DapX-M_at |
0.25785 |
A |
0.897835 |
| AFFX-DapX-3_at |
0.747955 |
A |
0.932322 |
| AFFX-LysX-5_at |
2.76499 |
A |
0.440646 |
| AFFX-LysX-M_at |
4.41785 |
A |
0.287743 |
| AFFX-LysX-3_at |
4.88774 |
P |
0.036569 |
| AFFX-PheX-5_at |
0.62209 |
A |
0.843268 |
| AFFX-PheX-M_at |
0.377058 |
A |
0.966323 |
| AFFX-PheX-3_at |
1.0553 |
A |
0.897835 |
| AFFX-ThrX-5_at |
0.332803 |
A |
0.966323 |
| AFFX-ThrX-M_at |
1.67525 |
A |
0.544587 |
Total number of rows: 31099
Table truncated, full table size 957 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM184447.CEL.gz |
4.2 Mb |
(ftp)(http) |
CEL |
| GSM184447.CHP.gz |
166.7 Kb |
(ftp)(http) |
CHP |
| Processed data provided as supplementary file |
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