NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM18302 Query DataSets for GSM18302
Status Public on Mar 09, 2004
Title 1.0uM_IAA_3h_1.1
Sample type RNA
 
Source name whole plant, WT Col-0; biological replicate 1 of 2
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Exposure to 1.0micromolar IAA for 3h prior to harvest; biological replicate 1, hybridization 1; scaling factor 4.4. See series file for additional information.
Keywords = IAA
Keywords = whole plant
Keywords = indole-3-acetic acid
Lot batch = 2001994
 
Submission date Mar 05, 2004
Last update date Aug 28, 2007
Contact name Julia C Redman
E-mail(s) [email protected]
Phone 301-795-7000
URL http://www.tigr.org
Organization name The Institute for Genomic Research
Department Plant Genomics
Lab Christopher Town
Street address 9712 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL198
Series (1)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange

Data table header descriptions
ID_REF
VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 362.6 P 0.002275
AFFX-BioB-M_at 491.5 P 0.000081
AFFX-BioB-3_at 309 P 0.000169
AFFX-BioC-5_at 1054.7 P 0.00011
AFFX-BioC-3_at 596.5 P 0.00007
AFFX-BioDn-5_at 1002.6 P 0.000044
AFFX-BioDn-3_at 4147.5 P 0.000044
AFFX-CreX-5_at 10310 P 0.000044
AFFX-CreX-3_at 14091.8 P 0.000044
AFFX-DapX-5_at 558 P 0.00007
AFFX-DapX-M_at 1904 P 0.000052
AFFX-DapX-3_at 4031.7 P 0.000044
AFFX-LysX-5_at 16912.9 P 0.000044
AFFX-LysX-M_at 24381.9 P 0.000044
AFFX-LysX-3_at 21408.1 P 0.000044
AFFX-PheX-5_at 27688.9 P 0.000044
AFFX-PheX-M_at 28118.7 P 0.000044
AFFX-PheX-3_at 32220.1 P 0.000044
AFFX-ThrX-5_at 4.1 A 0.860518
AFFX-ThrX-M_at 6.6 A 0.852061

Total number of rows: 22810

Table truncated, full table size 589 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap