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Sample GSM18300 Query DataSets for GSM18300
Status Public on Mar 09, 2004
Title 1.0uM_IAA_1h_2.1
Sample type RNA
 
Source name whole plant, WT Col-0; biological replicate 2 of 2
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Exposure to 1.0micromolar IAA for 1h prior to harvest; biological replicate 2, hybridization 1; scaling factor 2.4. See series file for additional information.
Keywords = IAA
Keywords = whole plant
Keywords = indole-3-acetic acid
Lot batch = 2001994
 
Submission date Mar 05, 2004
Last update date Aug 28, 2007
Contact name Julia C Redman
E-mail(s) [email protected]
Phone 301-795-7000
URL http://www.tigr.org
Organization name The Institute for Genomic Research
Department Plant Genomics
Lab Christopher Town
Street address 9712 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL198
Series (1)
GSE1110 Arabidopsis thaliana gene expression in response to IAA challange

Data table header descriptions
ID_REF
VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
DETECTION P-VALUE Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 217.6 P 0.002556
AFFX-BioB-M_at 269.3 P 0.000095
AFFX-BioB-3_at 145.3 P 0.000258
AFFX-BioC-5_at 637.2 P 0.000509
AFFX-BioC-3_at 350.5 P 0.000081
AFFX-BioDn-5_at 532.7 P 0.000044
AFFX-BioDn-3_at 2601.1 P 0.000052
AFFX-CreX-5_at 5965.7 P 0.000044
AFFX-CreX-3_at 7620.8 P 0.000044
AFFX-DapX-5_at 1049.4 P 0.000044
AFFX-DapX-M_at 3074.4 P 0.000052
AFFX-DapX-3_at 5548.1 P 0.000044
AFFX-LysX-5_at 12376.9 P 0.000044
AFFX-LysX-M_at 16106 P 0.000044
AFFX-LysX-3_at 14383.3 P 0.000044
AFFX-PheX-5_at 17173.9 P 0.000044
AFFX-PheX-M_at 17386.6 P 0.000044
AFFX-PheX-3_at 18853.5 P 0.000044
AFFX-ThrX-5_at 5.2 A 0.824672
AFFX-ThrX-M_at 18.5 A 0.51489

Total number of rows: 22810

Table truncated, full table size 589 Kbytes.




Supplementary data files not provided

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