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GEO accession:
Sample GSM180065
Query DataSets for GSM180065
Status
Public on Oct 05, 2007
Title
Ren2, compensated, rat 6
Sample type
RNA
Source name
heart muscle
Organism
Rattus norvegicus
Characteristics
strain: TGR(mRen-2)27 (Ren-2) on Sprague Dawley background; gender: male; age: 10 weeks; tissue: biopsy from cardiac left ventricle
Biomaterial provider
University of Maastricht, Experimental and Molecular Cardiology, Blanche Schroen/ Arie van Erk/ Yigal Pinto
Treatment protocol
none
Growth protocol
animals were kept on a standard diet
Extracted molecule
total RNA
Extraction protocol
Picopure RNA isolation kit
Label
biotin
Label protocol
affymetrix 2-cycle cDNA synthesis kit
Hybridization protocol
see exp file
Scan protocol
see exp file
Description
none
Data processing
mas5.0
Submission date
Apr 03, 2007
Last update date
Oct 04, 2007
Contact name
Arie van Erk
E-mail(s)
[email protected]
Phone
+31 (043) 3882913
Organization name
University Maastricht
Department
BiGCaT Bioinformatics
Lab
Experimental and Molecular Cardiology
Street address
PO Box 616
City
Maastricht
ZIP/Postal code
6200MD
Country
Netherlands
Platform ID
GPL1355
Series (1)
GSE4286
Making a predictive heart failure expression profile in Ren2 rat left ventricles
Data table header descriptions
ID_REF
VALUE
signal value
ABS_CALL
detection call
DETECTION P-VALUE
detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
469.147
P
0.0336773
AFFX-BioB-M_at
514.979
P
0.000509415
AFFX-BioB-3_at
262.381
P
0.0113844
AFFX-BioC-5_at
1258.62
P
0.00010954
AFFX-BioC-3_at
1117.19
P
0.000581214
AFFX-BioDn-5_at
2488.25
P
0.000509415
AFFX-BioDn-3_at
7919.94
P
7.00668e-05
AFFX-CreX-5_at
16778.7
P
5.16732e-05
AFFX-CreX-3_at
14992.9
P
4.42873e-05
AFFX-DapX-5_at
126.2
P
0.0200219
AFFX-DapX-M_at
2322.2
P
0.000340305
AFFX-DapX-3_at
5273.12
P
5.16732e-05
AFFX-LysX-5_at
123.591
P
0.0239288
AFFX-LysX-M_at
555.428
P
0.0113844
AFFX-LysX-3_at
1597.42
P
6.02111e-05
AFFX-PheX-5_at
156.885
P
0.0336773
AFFX-PheX-M_at
350.075
P
0.00359458
AFFX-PheX-3_at
1017.71
P
0.000296708
AFFX-ThrX-5_at
26.9094
A
0.5
AFFX-ThrX-M_at
394.582
P
0.000753643
Total number of rows:
31099
Table truncated, full table size
931 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM180065.CHP.gz
8.0 Mb
(ftp)
(http)
CHP
GSM180065.EXP.gz
494 b
(ftp)
(http)
EXP
gsm180065.cel.gz
4.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
Processed data provided as supplementary file
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