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Sample GSM180003 Query DataSets for GSM180003
Status Public on Dec 01, 2007
Title Brain_Br353C5b
Sample type RNA
 
Source name Mouse Brain Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantle normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) [email protected]
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 13.96678009 52.1 1 13.96678009
297907 9.08707583 4.2 1 9.08707583
297912 11.01600671 15.4 1 11.01600671
297935 2.9 1 8.751700066
297990 0.2 1 7.25804575
297993 1.6 1 6.661485365
298000 12.50674918 19.8 1 12.50674918
298038 10.16464139 6.2 1 10.16464139
298121 -1.1 1 7.480789235
298130 -0.1 1 8.912265793
298143 13.52518974 56.4 1 13.52518974
298150 -0.7 1 7.892136301
298151 -0.1 1 7.017931099
298155 -0.1 1 8.079863726
298165 13.88447494 51.5 1 13.88447494
298174 10.62264204 6.7 1 10.62264204
298188 9.400233715 6.8 1 9.400233715
298200 16.71602923 93.7 1 16.71602923
298246 1.4 1 7.642029639
298248 -0.5 1 6.971921389

Total number of rows: 32996

Table truncated, full table size 1029 Kbytes.




Supplementary file Size Download File type/resource
GSM180003.txt.gz 253.1 Kb (ftp)(http) TXT

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