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GEO accession:
Sample GSM179994
Query DataSets for GSM179994
Status
Public on Dec 01, 2007
Title
Gastrocnemius_Gas615
Sample type
RNA
Source name
Mouse Gastrocnemius Strain C57BL/6J
Organism
Mus musculus
Characteristics
C57BL/6J. Male mice at about 120 days
Extracted molecule
total RNA
Extraction protocol
TRIzol extraction
Label
digioxigenin
Label protocol
Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
Hybridization protocol
Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol
Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description
Background strain
Data processing
Quantile normalization was performed
Submission date
Apr 02, 2007
Last update date
Apr 10, 2007
Contact name
Yongming Sun
E-mail(s)
[email protected]
Phone
650-638-6879
Organization name
Applied Biosystems
Street address
850 Lincoln Center Dr
City
Foster City
State/province
CA
ZIP/Postal code
94404
Country
USA
Platform ID
GPL2995
Series (1)
GSE7431
Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353
Data table header descriptions
ID_REF
VALUE
same as UNF_VALUE but with flagged values removed
S/N
Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG
Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE
Log2 transformed quantile normalized signal intensity
Data table
ID_REF
VALUE
S/N
FLAG
UNF_VALUE
297784
13.45047167
38.6
1
13.45047167
297907
0.1
1
7.860840407
297912
10.85541846
10.6
1
10.85541846
297935
-0.2
1
7.880028103
297990
1
1
8.353670067
297993
-1.3
1
7.494268397
298000
12.81025894
40.5
1
12.81025894
298038
2
1
9.387815521
298121
-0.9
1
8.575656724
298130
11.64754295
3.5
1
11.64754295
298143
2.4
1
9.772961215
298150
-0.4
1
8.69066561
298151
1.4
1
8.148529341
298155
-0.2
1
8.583750406
298165
11.08871742
4.9
1
11.08871742
298174
10.34274231
4.5
1
10.34274231
298188
1.3
1
8.574438745
298200
16.36173837
100.9
1
16.36173837
298246
9.467835942
3.7
1
9.467835942
298248
1.2
1
8.140321306
Total number of rows:
32996
Table truncated, full table size
997 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM179994.txt.gz
245.7 Kb
(ftp)
(http)
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