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Sample GSM179992 Query DataSets for GSM179992
Status Public on Dec 01, 2007
Title Gastrocnemius_Gas552
Sample type RNA
 
Source name Mouse Gastrocnemius Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) [email protected]
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 12.97169657 61 1 12.97169657
297907 2.4 1 9.04400834
297912 11.18967637 15.1 1 11.18967637
297935 -0.6 1 8.167647747
297990 12.06125059 15.9 1 12.06125059
297993 0.3 1 7.925525855
298000 12.39110045 19.8 1 12.39110045
298038 0.5 1 8.134196041
298121 -0.1 1 8.689611385
298130 1.7 1 10.81815096
298143 9.926792726 4.3 1 9.926792726
298150 8.307042746 4.6 1 8.307042746
298151 1 1 7.700233543
298155 0.1 1 7.94065538
298165 11.12129086 9.4 1 11.12129086
298174 11.7632361 7.8 1 11.7632361
298188 -0.2 1 8.209292955
298200 17.06964401 110.5 1 17.06964401
298246 -0.9 1 8.454368269
298248 0.4 1 7.870158545

Total number of rows: 32996

Table truncated, full table size 999 Kbytes.




Supplementary file Size Download File type/resource
GSM179992.txt.gz 245.0 Kb (ftp)(http) TXT

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