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GEO accession:
Sample GSM179989
Query DataSets for GSM179989
Status
Public on Dec 01, 2007
Title
Liver_Lb573
Sample type
RNA
Source name
Mouse Liver Strain C57BL/6J
Organism
Mus musculus
Characteristics
C57BL/6J. Male mice at about 120 days
Extracted molecule
total RNA
Extraction protocol
TRIzol extraction
Label
digioxigenin
Label protocol
Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
Hybridization protocol
Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol
Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description
Background strain
Data processing
Quantile normalization was performed
Submission date
Apr 02, 2007
Last update date
Apr 10, 2007
Contact name
Yongming Sun
E-mail(s)
[email protected]
Phone
650-638-6879
Organization name
Applied Biosystems
Street address
850 Lincoln Center Dr
City
Foster City
State/province
CA
ZIP/Postal code
94404
Country
USA
Platform ID
GPL2995
Series (1)
GSE7431
Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353
Data table header descriptions
ID_REF
VALUE
same as UNF_VALUE but with flagged values removed
S/N
Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG
Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE
Log2 transformed quantile normalized signal intensity
Data table
ID_REF
VALUE
S/N
FLAG
UNF_VALUE
297784
14.62533609
69.5
1
14.62533609
297907
-1.7
1
8.835908473
297912
11.1449957
8.3
1
11.1449957
297935
9.890781111
3.2
1
9.890781111
297990
0.7
1
8.243345796
297993
-0.5
1
6.91056449
298000
12.98152342
27.3
1
12.98152342
298038
0.1
1
7.791386305
298121
0.9
1
7.738887582
298130
-0.1
1
8.825215702
298143
12.30058268
13.1
1
12.30058268
298150
0
1
8.372681771
298151
9.30117638
3.2
1
9.30117638
298155
-0.7
1
8.814027145
298165
0.9
1
8.60296087
298174
10.86932209
3.8
1
10.86932209
298188
-0.3
1
7.846115782
298200
15.94215975
74.5
1
15.94215975
298246
1.3
1
8.475151817
298248
-0.7
1
8.474099139
Total number of rows:
32996
Table truncated, full table size
992 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM179989.txt.gz
243.7 Kb
(ftp)
(http)
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