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Sample GSM179986 Query DataSets for GSM179986
Status Public on Dec 01, 2007
Title Liver_L552
Sample type RNA
 
Source name Mouse Liver Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) [email protected]
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.68322888 72.5 1 14.68322888
297907 0.5 1 8.290123509
297912 10.86815785 10.9 1 10.86815785
297935 0.8 1 7.604611631
297990 0.6 1 7.952284184
297993 0.5 1 7.993972996
298000 13.69286577 60.8 1 13.69286577
298038 1.1 1 8.105665868
298121 2.9 1 9.444525461
298130 0.5 1 9.563969647
298143 11.959164 13.8 1 11.959164
298150 1.3 1 8.74179601
298151 -0.4 1 9.128631368
298155 2.4 1 9.631562428
298165 2.3 1 9.661960002
298174 11.14290207 4.9 1 11.14290207
298188 2.3 1 9.524934299
298200 16.84826631 80.1 1 16.84826631
298246 -1.1 1 8.104011401
298248 1.5 1 8.72736092

Total number of rows: 32996

Table truncated, full table size 996 Kbytes.




Supplementary file Size Download File type/resource
GSM179986.txt.gz 242.5 Kb (ftp)(http) TXT

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