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Sample GSM179984 Query DataSets for GSM179984
Status Public on Dec 01, 2007
Title Liver_L571
Sample type RNA
 
Source name Mouse Liver Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353 Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) [email protected]
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.29844057 65.6 1 14.29844057
297907 0.4 1 7.898508401
297912 11.57856087 19 1 11.57856087
297935 -0.8 1 8.153220686
297990 10.20110321 3.7 1 10.20110321
297993 0.1 1 7.7889463
298000 12.98781797 34.3 1 12.98781797
298038 -0.7 1 7.922024733
298121 -1.1 1 7.639498912
298130 -0.2 1 9.252093813
298143 12.37598566 21.5 1 12.37598566
298150 -1.9 1 7.988131331
298151 0.1 1 8.916766879
298155 9.579762695 4.1 1 9.579762695
298165 10.14300026 4.1 1 10.14300026
298174 11.8255681 13.4 1 11.8255681
298188 -0.5 1 8.473558158
298200 15.69514395 68.9 1 15.69514395
298246 -0.6 1 8.057724689
298248 1.7 1 8.794690283

Total number of rows: 32996

Table truncated, full table size 998 Kbytes.




Supplementary file Size Download File type/resource
GSM179984.txt.gz 241.3 Kb (ftp)(http) TXT

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