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Sample GSM179982 Query DataSets for GSM179982
Status Public on Dec 01, 2007
Title Brain_Br353C4a
Sample type RNA
 
Source name Mouse Brain Strain B6.C-D7Mit353
Organism Mus musculus
Characteristics B6.C-D7Mit353. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Lean congenic homozygote strain
Data processing Quantle normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) [email protected]
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.82502592 52.2 0 14.82502592
297907 1.1 1 7.458626463
297912 11.47525759 23.3 1 11.47525759
297935 9.300379155 3.6 1 9.300379155
297990 1 1 7.840663065
297993 -0.5 1 7.307189687
298000 12.18265576 20.6 1 12.18265576
298038 8.673278537 13.6 1 8.673278537
298121 0.3 1 6.741909552
298130 0.3 1 9.108059118
298143 13.82290809 104.5 1 13.82290809
298150 -1.4 1 6.470809744
298151 8.807623559 3.1 1 8.807623559
298155 -2.8 1 6.615921615
298165 13.14670992 50.8 1 13.14670992
298174 9.667556169 3.6 1 9.667556169
298188 9.489393018 4.2 1 9.489393018
298200 16.97248586 141.2 1 16.97248586
298246 0 1 7.787268091
298248 0.2 1 6.730976807

Total number of rows: 32996

Table truncated, full table size 1019 Kbytes.




Supplementary file Size Download File type/resource
GSM179982.txt.gz 251.5 Kb (ftp)(http) TXT

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