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Sample GSM177009 Query DataSets for GSM177009
Status Public on Mar 24, 2007
Title Dicer T00312751_15773_6
Sample type RNA
 
Source name embryonic heart control group
Organism Mus musculus
Characteristics embryonic day 11.5 heart
Extracted molecule total RNA
Extraction protocol For RNA isolation, embryonic heart was dissected out and lysed using QiaShredder. RNA was isolated using RNeasy micro columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description control group
Data processing GeneSpring analysis
 
Submission date Mar 22, 2007
Last update date Oct 30, 2008
Contact name Ankang Li
E-mail(s) [email protected]
Organization name IBT
Department CMDD
Street address 2121 West Holcombe
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL5025
Series (1)
GSE7343 Dicer conditional knockout embryonic heart mutant vs control array

Data table header descriptions
ID_REF
RAW_INTENSITY raw signal intensity
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag G=Good signal; L=Limit signal; I=Irregular shape; S=Saturated signal; M=MSR spot; C=Background contaminated; X=User excluded spots
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
UNF_VALUE Normalized signal

Data table
ID_REF RAW_INTENSITY VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1 6307.3594 83.7708 G 103.4931 6345.3594 2485 6696.1118 155 14.04820728 61.31192831 41.5417 38 15.5413 124 83.7708
2 1169.217 15.5289 G 19.1424 1208.217 1407 688.139 108 11.72646046 63.11726381 41.975 39 16.0782 124 15.5289
3 32.4255 0.4307 G 1.2395 70.4255 70 26.3566 47 7.735777855 56.81798518 40.4025 38 12.5453 165 0.4307
4 280.131 3.7205 G 5.0706 318.131 313 124.7291 84 10.34176636 62.74027318 41.5714 38 16.4935 188 3.7205
5 90.7692 1.2055 G 2.1652 124.7692 115 46.5792 65 9.097283363 57.62450329 39.3204 34 15.7497 187 1.2055
6 15.3409 L 0.9444 53.3409 54 25.4218 44 7.484820843 56.47923745 39.1602 38 12.3195 187 0.2037
7 6703.2324 89.0285 G 108.692 6741.2324 4068 6788.3096 144 13.54055023 62.02144756 43.025 38 16.0143 124 89.0285
8 6352.9741 84.3766 G 102.7796 6390.9741 4089 5910.3887 119 12.30916309 62.18137029 42.8022 38 16.1209 188 84.3766
9 244.6933 3.2499 G 4.7659 283.6933 282 107.4987 75 9.772049904 59.5255541 40.8485 39 13.6837 171 3.2499
10 92.8841 1.2336 G 2.1857 132.8841 135 51.6562 69 9.373021126 60.79622707 42.1648 40 13.8641 188 1.2336
11 44.5789 0.5921 G 1.2908 81.5789 79 30.0374 57 8.519076347 63.19843485 42.0385 37 17.4656 188 0.5921
12 5110.7075 67.8775 G 86.3363 5149.7075 2418 5316.7905 132 12.96408939 59.64703801 41.5549 39 13.7647 188 67.8775
13 5166.5776 68.6195 G 80.3929 5205.5776 2587 5307.5068 137 13.20733929 64.75169136 44.1553 39 17.1678 107 68.6195
14 6.0795 L 0.7045 45.0795 40 18.6061 88 10.58513451 63.98818496 43.5591 39 16.6588 192 0.0807
15 6.4643 L 0.7295 46.4643 42 19.3492 56 8.444016457 63.69202768 43.2639 40 15.7947 74 0.0859
16 30.0185 0.3987 G 1.2034 68.0185 68 26.42 54 8.291859627 56.51990725 40.1635 38 12.3466 165 0.3987
17 10.4333 L 0.8225 48.4333 44 20.9248 60 8.740387917 58.88268022 42.3063 38 13.9218 115 0.1386
18 5148.3687 68.3777 G 86.9245 5185.3687 2243 5582.0371 143 13.49345207 59.65372302 42.2294 37 15.1025 113 68.3777
19 5410.3667 71.8574 G 90.5479 5448.3667 1485 5851.02 141 13.39875984 60.17107084 41.8119 38 14.7807 105 71.8574
20 4.1471 L 0.7551 43.1471 41 15.5131 34 6.579524517 57.14045822 40.0542 39 12.0936 172 0.0551

Total number of rows: 36227

Table truncated, full table size 3735 Kbytes.




Supplementary file Size Download File type/resource
GSM177009.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table
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