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Sample GSM177007 Query DataSets for GSM177007
Status Public on Mar 24, 2007
Title Dicer T00312749_15605_6
Sample type RNA
 
Source name embryonic heart control group
Organism Mus musculus
Characteristics embryonic day 11.5 heart
Extracted molecule total RNA
Extraction protocol For RNA isolation, embryonic heart was dissected out and lysed using QiaShredder. RNA was isolated using RNeasy micro columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description control group
Data processing GeneSpring analysis
 
Submission date Mar 22, 2007
Last update date Oct 30, 2008
Contact name Ankang Li
E-mail(s) [email protected]
Organization name IBT
Department CMDD
Street address 2121 West Holcombe
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL5025
Series (1)
GSE7343 Dicer conditional knockout embryonic heart mutant vs control array

Data table header descriptions
ID_REF
RAW_INTENSITY raw signal intensity
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag G=Good signal; L=Limit signal; I=Irregular shape; S=Saturated signal; M=MSR spot; C=Background contaminated; X=User excluded spots
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
UNF_VALUE Normalized signal

Data table
ID_REF RAW_INTENSITY VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1 7610.71 95.2803 G 125.541 7649.71 2531 8543.1406 164 14.45030403 60.93396104 43.3917 39 14.6226 124 95.2803
2 1124.101 14.0729 G 19.5441 1163.101 1335 709.326 111 11.8882122 59.51155157 41.0583 39 13.6744 124 14.0729
3 18.475 L 0.9872 57.475 61 20.423 40 7.136496544 58.2191544 41.1914 39 12.8128 168 0.2313
4 206.2588 2.5822 G 4.0805 245.2588 245 88.8813 85 10.40314198 60.10480716 41.5549 39 14.0699 188 2.5822
5 60.0448 0.7517 G 1.5318 102.0448 97 37.3009 67 9.236181259 66.61861528 44.5604 42 16.4124 188 0.7517
6 10.1714 L 0.8258 51.1714 44 20.884 35 6.675580978 61.96565333 42.478 41 13.9771 188 0.1273
7 8031.9302 100.5536 G 127.8023 8073.9302 2818 8844.9287 159 14.22832012 63.17515952 44.0917 42 14.1168 124 100.5536
8 7993.7231 100.0753 G 130.0798 8033.7231 4543 8341.6514 132 12.96408939 61.75997207 43.0879 40 14.5066 188 100.0753
9 220.9351 2.7659 G 3.916 263.9351 269 91.0064 77 9.90148735 67.39948512 45.7033 43 16.2663 188 2.7659
10 63.4478 0.7943 G 1.7208 100.4478 98 39.9941 67 9.236181259 58.37263704 40.7802 37 14.2484 188 0.7943
11 46.6452 0.584 G 1.4126 84.6452 79 29.8562 62 8.884866714 59.91963493 41.5659 38 14.6131 188 0.584
12 8673.6484 108.5874 G 141.4277 8714.6484 5946 8754.2744 127 12.71618748 61.61911097 43.4011 41 13.7461 188 108.5874
13 7571.2148 94.7858 G 122.7444 7611.2148 2526 8636.916 151 13.86575508 62.0086332 44.3083 40 14.6724 124 94.7858
14 6.9063 L 0.7345 44.9063 42 12.2789 32 6.383076668 61.14179017 41.443 38 15.4279 164 0.0865
15 11.3684 L 0.7914 49.3684 45 21.1814 57 8.519076347 62.38486984 43.5833 38 16.2566 124 0.1423
16 20.2326 0.2533 G 1.0212 60.2326 61 24.2965 43 7.39927721 58.98316029 42.8425 40 12.6554 152 0.2533
17 13.1923 L 0.833 52.1923 50 24.5678 52 8.136857986 62.65366896 43.7917 39 15.7691 124 0.1652
18 7733.8857 96.8223 G 117.5999 7778.8857 2564 8803.0664 151 13.86575508 66.14706141 45.6724 45 14.098 120 96.8223
19 7401.6953 92.6636 G 124.8196 7440.6953 2477 8601.3896 153 13.95727921 59.61159982 41.8966 39 13.7411 120 92.6636
20 8.759 L 0.8122 51.759 46 23.2838 83 10.28002357 63.72377936 45.0679 43 13.8159 229 0.1097

Total number of rows: 36227

Table truncated, full table size 3741 Kbytes.




Supplementary file Size Download File type/resource
GSM177007.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table
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