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Sample GSM17367 Query DataSets for GSM17367
Status Public on Jan 10, 2005
Title DFAL6
Sample type RNA
 
Source name Liver of female Ames dwarf mouse (df/df) with ad libitum access to standard pelleted food
Organism Mus musculus
Extracted molecule total RNA
 
Description Female Ames dwarf mouse (df/df) with ad libitum access to water and standard pelleted food (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops. Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction
 
Submission date Mar 01, 2004
Last update date May 28, 2005
Contact name Stephen R. Spindler
E-mail(s) [email protected]
Phone 909-787-3597
Fax 909-787-4434
URL http://www.biochemistry.ucr.edu/faculty/spindler.html
Organization name University of California, Riverside
Department Biochemistry
Street address
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL81
Series (2)
GSE1086 Dwarf Ad libitum
GSE1093 caloric restriction

Data table header descriptions
ID_REF
Stat Pairs Number of probe pairs for each transcription unit
Stat Pairs Used Number of probe pairs used in the analysis
VALUE MAS 5.0 Calculated intensity of the signal measured by each probe set
ABS_CALL Absent (A), Present (P), or Marginal (M) as judged by the detection P value
Detection p-value Detection P value calculated by MAS 5.0

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 21.4 A 0.737173
AFFX-MurIL10_at 20 20 66.7 A 0.440646
AFFX-MurIL4_at 20 20 7.1 A 0.631562
AFFX-MurFAS_at 20 20 206.4 P 0.000972
AFFX-BioB-5_at 20 20 332.7 P 0.012547
AFFX-BioB-M_at 20 20 430.9 P 0.002556
AFFX-BioB-3_at 20 20 293.2 P 0.002556
AFFX-BioC-5_at 20 20 781.5 P 0.000195
AFFX-BioC-3_at 20 20 423.2 P 0.00011
AFFX-BioDn-5_at 20 20 894.7 P 0.000147
AFFX-BioDn-3_at 20 20 4752.6 P 0.00039
AFFX-CreX-5_at 20 20 9292.5 P 0.000052
AFFX-CreX-3_at 20 20 11359.7 P 0.000044
AFFX-BioB-5_st 20 20 20.5 A 0.52976
AFFX-BioB-M_st 20 20 50.8 A 0.724854
AFFX-BioB-3_st 20 20 29.1 A 0.737173
AFFX-BioC-5_st 20 20 31.4 A 0.804734
AFFX-BioC-3_st 20 20 6.5 A 0.749204
AFFX-BioDn-5_st 20 20 202.4 A 0.216524
AFFX-BioDn-3_st 20 20 217.6 A 0.083592

Total number of rows: 12488

Table truncated, full table size 393 Kbytes.




Supplementary data files not provided

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