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GEO accession:
Sample GSM173099
Query DataSets for GSM173099
Status
Public on Apr 01, 2008
Title
4 BJ-TE, 100% confluent, p73 shRNA
Sample type
RNA
Source name
BJ-TE cell line
Organism
Homo sapiens
Characteristics
cell line (BJ-TE)
Extracted molecule
total RNA
Extraction protocol
trizol extraction protocol
Label
biotin
Label protocol
Affymetrix standard protocol
Hybridization protocol
Affymetrix standard protocol
Scan protocol
Affymetrix standard protocol
Description
BJ-TE cells treated with shRNA for p73 in a 100% confluent state
Data processing
Affymetrix standard protocol
Submission date
Mar 06, 2007
Last update date
May 30, 2007
Contact name
Christof Burek
E-mail(s)
[email protected]
Phone
++49 (0)931 20147696
Organization name
Universitaet Wuerzburg
Department
Pathologie
Lab
Rosenwald
Street address
Josef-schneider-Str. 2
City
Wuerzburg
ZIP/Postal code
97080
Country
Germany
Platform ID
GPL571
Series (1)
GSE7201
p73 inhibits malignant transformation
Data table header descriptions
ID_REF
VALUE
absolute flourescence signal (Affymetrix arbitrary units)
ABS_CALL
present (p), absent (a)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
202.036
P
0.000662269
AFFX-BioB-M_at
277.008
P
4.42873e-05
AFFX-BioB-3_at
180.228
P
0.000195116
AFFX-BioC-5_at
659.782
P
5.16732e-05
AFFX-BioC-3_at
845.838
P
4.42873e-05
AFFX-BioDn-5_at
1516.42
P
4.42873e-05
AFFX-BioDn-3_at
3366.66
P
7.00668e-05
AFFX-CreX-5_at
8834.34
P
5.16732e-05
AFFX-CreX-3_at
10530.9
P
4.42873e-05
AFFX-DapX-5_at
691.834
P
4.42873e-05
AFFX-DapX-M_at
1168.67
P
0.000169227
AFFX-DapX-3_at
1502.36
P
4.42873e-05
AFFX-LysX-5_at
72.2892
P
0.000258358
AFFX-LysX-M_at
120.78
P
0.00556451
AFFX-LysX-3_at
249.598
P
8.14279e-05
AFFX-PheX-5_at
88.7629
P
5.16732e-05
AFFX-PheX-M_at
162.725
P
5.16732e-05
AFFX-PheX-3_at
178.188
P
0.000146581
AFFX-ThrX-5_at
193.666
P
7.00668e-05
AFFX-ThrX-M_at
274.194
P
4.42873e-05
Total number of rows:
22277
Table truncated, full table size
678 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM173099.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
GSM173099.CHP.gz
120.7 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
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