|
| Status |
Public on Sep 01, 2015 |
| Title |
EC3 |
| Sample type |
genomic |
| |
|
| Source name |
genomic DNA from endometrial sample EC3
|
| Organism |
Homo sapiens |
| Characteristics |
sample id: EC3
primary disease dx: Endometrial cancer
sample type: Tumor
tumor.type: Metastasis
tissue site: Omental tissue
tumor percent: 60
gender: Female
sentrix id: 8963282009_R02C01
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol for Infinium 450k Chip
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Endometrial Hyperplasias, Primary Cancers and Metastases
|
| Data processing |
Raw .idat files were processed using minfi (v1.11.0) Bioconductor package and beta-values defined according to the standard Illumina definition
|
| |
|
| Submission date |
Mar 20, 2015 |
| Last update date |
Sep 01, 2015 |
| Contact name |
Andrew E Teschendorff |
| E-mail(s) |
[email protected]
|
| Phone |
+44 02076790727
|
| Organization name |
University College London
|
| Department |
UCL Cancer Institute/Institute for Women's Health
|
| Street address |
72 Huntley Street
|
| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL16304 |
| Series (1) |
| GSE67116 |
Genome wide DNA methylation profiling of hyperplasias, primary endometrial cancer and metastases |
|
