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Sample GSM1591726 Query DataSets for GSM1591726
Status Public on Jan 27, 2015
Title S2
Sample type RNA
 
Source name mouse lung scc cell line1
Organism Mus musculus
Characteristics tissue: lung
cell line: S2
Growth protocol Both cell lines were cultured in DMEM containing 10% FBS and pen/strep, in an incubator at 37°C with a mixture of air and 5% CO2.
Extracted molecule total RNA
Extraction protocol Cultured cells were harvested after twice washes with 1×PBS. Total RNA was isolated from the cell lines using TRIZOL (Invitrogen) and sent out for microarray.
Label biotin
Label protocol Affymetrix Mouse Genome 430 2.0 Array
 
Hybridization protocol Affymetrix Mouse Genome 430 2.0 Array
Scan protocol Affymetrix Mouse Genome 430 2.0 Array
Data processing MAS5
 
Submission date Jan 26, 2015
Last update date Jan 27, 2015
Contact name zuoxiang xiao
E-mail(s) [email protected]
Phone 301 846 1632
Organization name NCI
Street address Bldg 567, Rm. 274, 1050 Boyles Street
City Frederick
ZIP/Postal code 21702
Country USA
 
Platform ID GPL1261
Series (1)
GSE65291 Gene expression alteration by different cell lines derived from lung SCC of IKKα mutant mice

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 314.922 P 5.16732e-05
AFFX-BioB-M_at 516.639 P 4.42873e-05
AFFX-BioB-3_at 325.716 P 4.42873e-05
AFFX-BioC-5_at 779.557 P 5.16732e-05
AFFX-BioC-3_at 1420.38 P 4.42873e-05
AFFX-BioDn-5_at 2212.7 P 4.42873e-05
AFFX-BioDn-3_at 3629.43 P 5.16732e-05
AFFX-CreX-5_at 8425.35 P 5.16732e-05
AFFX-CreX-3_at 9280.92 P 4.42873e-05
AFFX-DapX-5_at 355.631 P 5.16732e-05
AFFX-DapX-M_at 908.309 P 9.4506e-05
AFFX-DapX-3_at 1252.7 P 4.42873e-05
AFFX-LysX-5_at 73.6585 P 8.14279e-05
AFFX-LysX-M_at 109.041 P 0.000224668
AFFX-LysX-3_at 217.541 P 5.16732e-05
AFFX-PheX-5_at 85.0508 P 5.16732e-05
AFFX-PheX-M_at 117.175 P 4.42873e-05
AFFX-PheX-3_at 155.943 P 4.42873e-05
AFFX-ThrX-5_at 77.3637 P 0.000258358
AFFX-ThrX-M_at 143.398 P 9.4506e-05

Total number of rows: 45101

Table truncated, full table size 1379 Kbytes.




Supplementary file Size Download File type/resource
GSM1591726_S2_Mouse430_2_.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM1591726_S2_Mouse430_2_.mas5.CHP.gz 396.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data are available on Series record

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