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Status
Public on Jan 20, 2007
Title
NRMRL control replicate01, uninfected batch052005 430_2 chip
Sample type
RNA
Source name
Neonatal mouse small intestinal tissue, 24 hours
Organism
Mus musculus Characteristics
Swiss Webster neonatal mouse, 4-6 days old
Extracted molecule
total RNA
Extraction protocol
TriZol procedure
Label
Strepavidin Phycoerythrin (SAPE)
Label protocol
Affymetrix SOP, EukGE-WS2
Hybridization protocol
GCOS software, EukGE-WS2
Scan protocol
GCOS software with 3000 Scanner
Description
None
Data processing
GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065, Tau 0.015; Gamma1L and 1H 0.0045; Gamma2L and 2H 0.06; and Pertubation 1.1.
Submission date
Jan 17, 2007
Last update date
Aug 28, 2018
Contact name
Samuel Hayes
E-mail(s)
[email protected] Phone
513-569-7514
Organization name
United States Environmental Protection Agency
Department
MS-387
Lab
NRMRL/WSWRD
Street address
26 W. Martin Luther King Dr.
City
Cincinnati
State/province
OH
ZIP/Postal code
45268
Country
USA
Platform ID
GPL1261 Series (1)
GSE6765 Aeromonas caviae infection, 24 hours
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF EPA05020_60829_M430-2_EPA0106N_Stat Pairs Total probe sets
EPA05020_60829_M430-2_EPA0106N_Stat Pairs Used Probe sets used
VALUE Normalized intensity value
ABS_CALL present versus absent call
DETECTION P-VALUE Detection p-value
Data table ID_REF EPA05020_60829_M430-2_EPA0106N_Stat Pairs EPA05020_60829_M430-2_EPA0106N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
20
20
243.6
P
0.001593
AFFX-BioB-M_at
20
20
439.0
P
0.000127
AFFX-BioB-3_at
20
20
201.0
P
0.000390
AFFX-BioC-5_at
20
20
873.0
P
0.000060
AFFX-BioC-3_at
20
20
1084.0
P
0.000044
AFFX-BioDn-5_at
20
20
1471.6
P
0.000044
AFFX-BioDn-3_at
20
20
4325.7
P
0.000147
AFFX-CreX-5_at
20
20
12226.7
P
0.000052
AFFX-CreX-3_at
20
20
14553.8
P
0.000044
AFFX-DapX-5_at
20
20
23.9
A
0.131361
AFFX-DapX-M_at
20
20
5.0
A
0.617401
AFFX-DapX-3_at
20
20
6.3
A
0.852061
AFFX-LysX-5_at
20
20
2.1
A
0.960339
AFFX-LysX-M_at
20
20
4.6
A
0.891021
AFFX-LysX-3_at
20
20
20.6
A
0.123572
AFFX-PheX-5_at
20
20
2.4
A
0.973889
AFFX-PheX-M_at
20
20
4.9
A
0.631562
AFFX-PheX-3_at
20
20
30.7
A
0.368438
AFFX-ThrX-5_at
20
20
6.7
A
0.529760
AFFX-ThrX-M_at
20
20
5.5
A
0.737173
45101 1499 Kbytes .Supplementary file Size Download File type/resource GSM155996.CEL.gz
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