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Sample GSM1539782 Query DataSets for GSM1539782
Status Public on Aug 05, 2015
Title 7196843069_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: British
age: 93
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description OA0843
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.373723998
ILMN_1806310 6.047667908
ILMN_1653355 6.065739617
ILMN_1705025 6.013604237
ILMN_1814316 6.090375789
ILMN_3241953 6.090023824
ILMN_1735045 6.026485944
ILMN_1680754 6.14586149
ILMN_1659452 6.051697519
ILMN_1767388 6.191880481
ILMN_1755321 6.066210078
ILMN_1698554 6.154104406
ILMN_1814092 6.396870054
ILMN_2061446 6.969436841
ILMN_1676336 6.136938354
ILMN_1752884 6.016558074
ILMN_1668851 6.001213266
ILMN_1726986 6.060837427
ILMN_3237396 6.6871858
ILMN_1688755 7.556809148

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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