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Sample GSM1539739 Query DataSets for GSM1539739
Status Public on Aug 05, 2015
Title 7964814064_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 80
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZADC017
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.045305018
ILMN_1806310 6.062866427
ILMN_1653355 6.014119927
ILMN_1705025 6.101161189
ILMN_1814316 6.097072515
ILMN_3241953 6.158048033
ILMN_1735045 5.990024753
ILMN_1680754 6.082444978
ILMN_1659452 6.19814776
ILMN_1767388 6.051928605
ILMN_1755321 6.047624605
ILMN_1698554 6.082736465
ILMN_1814092 6.197892014
ILMN_2061446 7.360322644
ILMN_1676336 6.131150063
ILMN_1752884 6.042770424
ILMN_1668851 6.021586255
ILMN_1726986 6.113813461
ILMN_3237396 6.945266688
ILMN_1688755 7.842407535

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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