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Sample GSM1539628 Query DataSets for GSM1539628
Status Public on Aug 05, 2015
Title 7196843032_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Caribbean
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00502
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.37631746
ILMN_1806310 6.07186211
ILMN_1653355 6.032787617
ILMN_1705025 6.067058229
ILMN_1814316 6.061502568
ILMN_3241953 6.133317326
ILMN_1735045 6.006010342
ILMN_1680754 6.029010961
ILMN_1659452 6.043825026
ILMN_1767388 6.030754978
ILMN_1755321 6.101492968
ILMN_1698554 6.288289659
ILMN_1814092 6.143337794
ILMN_2061446 7.131567577
ILMN_1676336 6.199443701
ILMN_1752884 6.040798346
ILMN_1668851 6.036753511
ILMN_1726986 6.111694449
ILMN_3237396 6.660303264
ILMN_1688755 7.247672042

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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