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Sample GSM1539578 Query DataSets for GSM1539578
Status Public on Aug 05, 2015
Title 7964814051_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 81
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOCTL028
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.140950128
ILMN_1806310 6.012499509
ILMN_1653355 6.004862175
ILMN_1705025 6.065957571
ILMN_1814316 6.151746263
ILMN_3241953 6.088306072
ILMN_1735045 6.019477874
ILMN_1680754 6.149941577
ILMN_1659452 6.102853168
ILMN_1767388 6.089364398
ILMN_1755321 6.059176011
ILMN_1698554 6.158942436
ILMN_1814092 6.110408391
ILMN_2061446 6.989224767
ILMN_1676336 6.297361023
ILMN_1752884 6.017159301
ILMN_1668851 6.024917119
ILMN_1726986 6.048792585
ILMN_3237396 6.564439264
ILMN_1688755 7.490325024

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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