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Sample GSM1539561 Query DataSets for GSM1539561
Status Public on Aug 05, 2015
Title 7196843052_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Irish
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00544
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.071436634
ILMN_1806310 6.028115464
ILMN_1653355 5.998109738
ILMN_1705025 6.048379407
ILMN_1814316 6.086157312
ILMN_3241953 6.209602433
ILMN_1735045 6.002982112
ILMN_1680754 6.130309705
ILMN_1659452 6.128895429
ILMN_1767388 6.119380042
ILMN_1755321 6.030643062
ILMN_1698554 6.047484165
ILMN_1814092 6.151515197
ILMN_2061446 7.115236136
ILMN_1676336 6.379738752
ILMN_1752884 6.017085613
ILMN_1668851 6.047699878
ILMN_1726986 6.03717327
ILMN_3237396 6.853742564
ILMN_1688755 7.373076994

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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