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Sample GSM1539560 Query DataSets for GSM1539560
Status Public on Aug 05, 2015
Title 7196843052_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 80
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LNDADC023
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.130291606
ILMN_1806310 6.046117231
ILMN_1653355 6.010897923
ILMN_1705025 6.065550313
ILMN_1814316 6.017388118
ILMN_3241953 6.476952166
ILMN_1735045 6.007648308
ILMN_1680754 6.063156432
ILMN_1659452 6.020847843
ILMN_1767388 6.084604655
ILMN_1755321 6.125299744
ILMN_1698554 6.158517844
ILMN_1814092 6.156906211
ILMN_2061446 6.939531443
ILMN_1676336 6.291665151
ILMN_1752884 6.016786706
ILMN_1668851 6.026174473
ILMN_1726986 6.075703506
ILMN_3237396 6.740272429
ILMN_1688755 7.221000617

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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