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Sample GSM1539559 Query DataSets for GSM1539559
Status Public on Aug 05, 2015
Title 7196843081_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 78
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOMCI044
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.110170855
ILMN_1806310 6.054588935
ILMN_1653355 6.056384136
ILMN_1705025 6.03148207
ILMN_1814316 6.013314612
ILMN_3241953 6.074993949
ILMN_1735045 6.015552118
ILMN_1680754 6.231563128
ILMN_1659452 6.110823461
ILMN_1767388 6.000830301
ILMN_1755321 6.163831851
ILMN_1698554 6.297347685
ILMN_1814092 6.168926886
ILMN_2061446 7.090790794
ILMN_1676336 6.201900079
ILMN_1752884 6.031721378
ILMN_1668851 6.007649949
ILMN_1726986 6.150214739
ILMN_3237396 6.529542161
ILMN_1688755 7.88066043

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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