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Sample GSM1539557 Query DataSets for GSM1539557
Status Public on Aug 05, 2015
Title 7196843081_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 84
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LNDMCI011
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.079514064
ILMN_1806310 6.092945543
ILMN_1653355 6.019204911
ILMN_1705025 6.07098898
ILMN_1814316 6.032861214
ILMN_3241953 6.149961495
ILMN_1735045 6.009009329
ILMN_1680754 6.070282791
ILMN_1659452 6.100966028
ILMN_1767388 6.06981976
ILMN_1755321 6.038094472
ILMN_1698554 6.202917543
ILMN_1814092 6.272891643
ILMN_2061446 7.083510374
ILMN_1676336 6.241372182
ILMN_1752884 6.053327627
ILMN_1668851 6.005148541
ILMN_1726986 6.017391771
ILMN_3237396 6.725941974
ILMN_1688755 7.739590902

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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