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Sample GSM1539553 Query DataSets for GSM1539553
Status Public on Aug 05, 2015
Title 7196843081_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 77
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL028
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.115990886
ILMN_1806310 6.000052671
ILMN_1653355 6.031142938
ILMN_1705025 6.039101234
ILMN_1814316 6.049979721
ILMN_3241953 6.223051599
ILMN_1735045 6.009023473
ILMN_1680754 6.108532998
ILMN_1659452 6.092641138
ILMN_1767388 6.019753703
ILMN_1755321 6.16169861
ILMN_1698554 6.159928082
ILMN_1814092 6.276531094
ILMN_2061446 7.039529668
ILMN_1676336 6.343572072
ILMN_1752884 6.019392552
ILMN_1668851 6.030640729
ILMN_1726986 6.058541902
ILMN_3237396 6.824885469
ILMN_1688755 7.733657516

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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