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Sample GSM1539545 Query DataSets for GSM1539545
Status Public on Aug 05, 2015
Title 7196843036_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 73
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOADC041
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.113118034
ILMN_1806310 6.040165497
ILMN_1653355 6.021712643
ILMN_1705025 6.029575464
ILMN_1814316 6.024498825
ILMN_3241953 6.178930535
ILMN_1735045 6.00698098
ILMN_1680754 6.107924098
ILMN_1659452 6.04892148
ILMN_1767388 6.026340104
ILMN_1755321 6.107211577
ILMN_1698554 6.216116197
ILMN_1814092 6.102297307
ILMN_2061446 6.984152437
ILMN_1676336 6.358856573
ILMN_1752884 6.033455956
ILMN_1668851 6.007241315
ILMN_1726986 6.048195074
ILMN_3237396 6.554254025
ILMN_1688755 7.39974626

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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