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Sample GSM1539540 Query DataSets for GSM1539540
Status Public on Aug 05, 2015
Title 7196843062_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LNDADC040
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.128641467
ILMN_1806310 6.083498351
ILMN_1653355 6.060978203
ILMN_1705025 6.022869942
ILMN_1814316 6.013884779
ILMN_3241953 6.187578751
ILMN_1735045 6.04292765
ILMN_1680754 6.112255955
ILMN_1659452 6.02760507
ILMN_1767388 6.086977729
ILMN_1755321 6.107656841
ILMN_1698554 6.074226447
ILMN_1814092 6.237387944
ILMN_2061446 7.14623079
ILMN_1676336 6.268887062
ILMN_1752884 6.100053301
ILMN_1668851 6.01730586
ILMN_1726986 6.032806769
ILMN_3237396 6.490762745
ILMN_1688755 7.898288386

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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