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Sample GSM1539534 Query DataSets for GSM1539534
Status Public on Aug 05, 2015
Title 7196843091_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: British_English
age: 62
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00181
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.07608526
ILMN_1806310 6.026764328
ILMN_1653355 6.039272515
ILMN_1705025 6.048821902
ILMN_1814316 6.023205025
ILMN_3241953 6.426960429
ILMN_1735045 5.996071058
ILMN_1680754 6.057628043
ILMN_1659452 6.058446947
ILMN_1767388 6.027845063
ILMN_1755321 6.136832079
ILMN_1698554 6.192756453
ILMN_1814092 6.15909856
ILMN_2061446 6.912626291
ILMN_1676336 6.267344679
ILMN_1752884 6.037536198
ILMN_1668851 6.016803388
ILMN_1726986 6.055487703
ILMN_3237396 6.887328339
ILMN_1688755 7.597060056

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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