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Sample GSM1539532 Query DataSets for GSM1539532
Status Public on Aug 05, 2015
Title 7196843072_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 75
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGADC048
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.003302891
ILMN_1806310 6.017552532
ILMN_1653355 6.069859844
ILMN_1705025 6.039725372
ILMN_1814316 6.039517634
ILMN_3241953 6.291943743
ILMN_1735045 6.002342592
ILMN_1680754 6.101417747
ILMN_1659452 6.153344699
ILMN_1767388 6.023894611
ILMN_1755321 6.05980607
ILMN_1698554 6.273732112
ILMN_1814092 6.044060913
ILMN_2061446 6.768430621
ILMN_1676336 6.388158637
ILMN_1752884 6.066104455
ILMN_1668851 6.047373513
ILMN_1726986 6.02945896
ILMN_3237396 6.792262187
ILMN_1688755 7.539854253

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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