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Sample GSM1539524 Query DataSets for GSM1539524
Status Public on Aug 05, 2015
Title 7196843090_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 70
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LNDADC005
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.245151652
ILMN_1806310 6.031233631
ILMN_1653355 6.099651086
ILMN_1705025 6.068732156
ILMN_1814316 6.022039
ILMN_3241953 6.145216609
ILMN_1735045 6.052232181
ILMN_1680754 6.093112849
ILMN_1659452 6.040850075
ILMN_1767388 6.04124529
ILMN_1755321 6.099464419
ILMN_1698554 6.218552656
ILMN_1814092 6.226927008
ILMN_2061446 7.099612896
ILMN_1676336 6.313769122
ILMN_1752884 6.052558555
ILMN_1668851 6.036344245
ILMN_1726986 6.03734267
ILMN_3237396 6.814869653
ILMN_1688755 8.065913903

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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