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Sample GSM1539521 Query DataSets for GSM1539521
Status Public on Aug 05, 2015
Title 7196843068_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 69
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGADC050
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.230678586
ILMN_1806310 6.016828835
ILMN_1653355 6.036580742
ILMN_1705025 6.037074723
ILMN_1814316 6.06960566
ILMN_3241953 6.38441126
ILMN_1735045 6.009918053
ILMN_1680754 6.141783117
ILMN_1659452 6.110868879
ILMN_1767388 6.017637186
ILMN_1755321 6.178013649
ILMN_1698554 6.252265782
ILMN_1814092 6.137173075
ILMN_2061446 6.895390687
ILMN_1676336 6.228113775
ILMN_1752884 6.025745259
ILMN_1668851 6.019082379
ILMN_1726986 6.031168574
ILMN_3237396 6.82055098
ILMN_1688755 7.691206656

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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