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Sample GSM1539518 Query DataSets for GSM1539518
Status Public on Aug 05, 2015
Title 7348931019_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 67
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOADC045
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.091556237
ILMN_1806310 6.005684494
ILMN_1653355 6.135571026
ILMN_1705025 6.054704891
ILMN_1814316 6.077741538
ILMN_3241953 6.328714826
ILMN_1735045 6.00240515
ILMN_1680754 6.039345119
ILMN_1659452 6.146650286
ILMN_1767388 6.057460546
ILMN_1755321 6.181127668
ILMN_1698554 6.198608477
ILMN_1814092 6.179546792
ILMN_2061446 7.004405882
ILMN_1676336 6.404512594
ILMN_1752884 6.04492141
ILMN_1668851 6.020334861
ILMN_1726986 6.01881161
ILMN_3237396 6.625938079
ILMN_1688755 7.614549054

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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