NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1539489 Query DataSets for GSM1539489
Status Public on Aug 05, 2015
Title 7196843068_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Other Caucasian
age: 69
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSCTL007
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.362056096
ILMN_1806310 6.045840723
ILMN_1653355 6.264227805
ILMN_1705025 6.104169763
ILMN_1814316 6.18099816
ILMN_3241953 6.026062395
ILMN_1735045 6.004064756
ILMN_1680754 6.080480487
ILMN_1659452 6.018715991
ILMN_1767388 6.221140998
ILMN_1755321 6.056049895
ILMN_1698554 6.15121319
ILMN_1814092 6.169106395
ILMN_2061446 7.533656521
ILMN_1676336 6.348721922
ILMN_1752884 6.026295738
ILMN_1668851 6.021304542
ILMN_1726986 6.198970165
ILMN_3237396 6.833671074
ILMN_1688755 7.748896578

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap