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Sample GSM1539479 Query DataSets for GSM1539479
Status Public on Aug 05, 2015
Title 7348931007_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 74
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL027
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.137585321
ILMN_1806310 6.02873687
ILMN_1653355 6.023257868
ILMN_1705025 6.023379528
ILMN_1814316 6.025780906
ILMN_3241953 6.060326874
ILMN_1735045 6.030425488
ILMN_1680754 6.339465452
ILMN_1659452 6.078758309
ILMN_1767388 6.063140806
ILMN_1755321 6.076943762
ILMN_1698554 6.221186656
ILMN_1814092 6.272142393
ILMN_2061446 7.131504762
ILMN_1676336 6.36265824
ILMN_1752884 6.022806722
ILMN_1668851 6.004760927
ILMN_1726986 6.15523725
ILMN_3237396 6.418997413
ILMN_1688755 7.853487645

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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