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Sample GSM1539477 Query DataSets for GSM1539477
Status Public on Aug 05, 2015
Title 7196843073_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 74
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL010
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.093689714
ILMN_1806310 6.065410321
ILMN_1653355 6.011675228
ILMN_1705025 6.036588705
ILMN_1814316 6.049950758
ILMN_3241953 6.356109286
ILMN_1735045 6.012533096
ILMN_1680754 6.132842226
ILMN_1659452 6.05796446
ILMN_1767388 6.072715567
ILMN_1755321 6.087341742
ILMN_1698554 6.153707638
ILMN_1814092 6.050330678
ILMN_2061446 6.733175729
ILMN_1676336 6.207855233
ILMN_1752884 6.032147829
ILMN_1668851 6.009340177
ILMN_1726986 6.021157097
ILMN_3237396 6.704168532
ILMN_1688755 7.660706832

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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