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Sample GSM1539460 Query DataSets for GSM1539460
Status Public on Aug 05, 2015
Title 7196835090_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: British_Welsh
age: 71
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00358
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.032650183
ILMN_1806310 6.046655345
ILMN_1653355 6.045405902
ILMN_1705025 6.040766882
ILMN_1814316 6.061316442
ILMN_3241953 6.171647999
ILMN_1735045 6.001490146
ILMN_1680754 6.284031643
ILMN_1659452 6.072910368
ILMN_1767388 6.03400029
ILMN_1755321 6.075610562
ILMN_1698554 6.180912394
ILMN_1814092 6.325551147
ILMN_2061446 7.034659072
ILMN_1676336 6.286061479
ILMN_1752884 6.02659228
ILMN_1668851 6.016734195
ILMN_1726986 6.027881204
ILMN_3237396 6.31852787
ILMN_1688755 7.438946396

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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