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Sample GSM1539447 Query DataSets for GSM1539447
Status Public on Aug 05, 2015
Title 7348931013_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 67
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL031
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.109676124
ILMN_1806310 5.980026374
ILMN_1653355 6.068145279
ILMN_1705025 6.008910534
ILMN_1814316 6.050084279
ILMN_3241953 6.261193252
ILMN_1735045 6.02404115
ILMN_1680754 6.19980421
ILMN_1659452 6.083880087
ILMN_1767388 5.999102972
ILMN_1755321 6.183157068
ILMN_1698554 6.23321995
ILMN_1814092 6.29074289
ILMN_2061446 6.825559108
ILMN_1676336 6.523773624
ILMN_1752884 6.027871518
ILMN_1668851 6.026882515
ILMN_1726986 6.020900596
ILMN_3237396 6.605072886
ILMN_1688755 7.270030245

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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