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Sample GSM1539443 Query DataSets for GSM1539443
Status Public on Aug 05, 2015
Title 7196843076_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 66
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL029
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.240271493
ILMN_1806310 6.189665296
ILMN_1653355 6.057687604
ILMN_1705025 6.046571805
ILMN_1814316 6.045494175
ILMN_3241953 6.045832339
ILMN_1735045 6.010488215
ILMN_1680754 6.102956565
ILMN_1659452 6.218425551
ILMN_1767388 6.23956766
ILMN_1755321 6.075244232
ILMN_1698554 6.139687291
ILMN_1814092 6.167991829
ILMN_2061446 7.347212859
ILMN_1676336 6.366073207
ILMN_1752884 6.044284081
ILMN_1668851 6.026085186
ILMN_1726986 6.119779601
ILMN_3237396 6.496138274
ILMN_1688755 7.710291883

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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