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Sample GSM1539442 Query DataSets for GSM1539442
Status Public on Aug 05, 2015
Title 7196843053_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 66
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL005
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.195223006
ILMN_1806310 6.049403899
ILMN_1653355 6.022853179
ILMN_1705025 6.019917533
ILMN_1814316 6.042677558
ILMN_3241953 6.347042036
ILMN_1735045 6.013483425
ILMN_1680754 6.123798731
ILMN_1659452 6.078834966
ILMN_1767388 6.08291482
ILMN_1755321 6.226147353
ILMN_1698554 6.280903134
ILMN_1814092 6.097949453
ILMN_2061446 6.907971909
ILMN_1676336 6.222956696
ILMN_1752884 6.02574749
ILMN_1668851 6.018808594
ILMN_1726986 6.041418892
ILMN_3237396 6.714598984
ILMN_1688755 8.049538899

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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