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Sample GSM1539438 Query DataSets for GSM1539438
Status Public on Aug 05, 2015
Title 7964814051_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: British
age: 75
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description OA0562
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.266377914
ILMN_1806310 6.013537073
ILMN_1653355 6.061286851
ILMN_1705025 6.049090969
ILMN_1814316 6.033017211
ILMN_3241953 6.174518689
ILMN_1735045 5.99859451
ILMN_1680754 6.162221091
ILMN_1659452 6.046372312
ILMN_1767388 6.048424885
ILMN_1755321 6.089818942
ILMN_1698554 6.179571383
ILMN_1814092 6.183301385
ILMN_2061446 7.271527251
ILMN_1676336 6.32190419
ILMN_1752884 6.040264449
ILMN_1668851 6.028100145
ILMN_1726986 6.034153979
ILMN_3237396 6.725466955
ILMN_1688755 7.843397257

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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