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Sample GSM1539436 Query DataSets for GSM1539436
Status Public on Aug 05, 2015
Title 7196843090_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 75
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LNDMCI015
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.047437242
ILMN_1806310 6.05484524
ILMN_1653355 6.015058638
ILMN_1705025 6.030721193
ILMN_1814316 6.071905306
ILMN_3241953 6.347487002
ILMN_1735045 5.994714078
ILMN_1680754 6.044765049
ILMN_1659452 6.10091295
ILMN_1767388 6.11305388
ILMN_1755321 6.034984815
ILMN_1698554 6.287317787
ILMN_1814092 6.199220466
ILMN_2061446 7.221967986
ILMN_1676336 6.196785337
ILMN_1752884 6.006665164
ILMN_1668851 6.005821011
ILMN_1726986 6.038641927
ILMN_3237396 6.765347503
ILMN_1688755 7.806298063

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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