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Sample GSM1539435 Query DataSets for GSM1539435
Status Public on Aug 05, 2015
Title 7943280008_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSMCI001
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.147963606
ILMN_1806310 6.043895446
ILMN_1653355 6.180489462
ILMN_1705025 6.016991498
ILMN_1814316 6.011395859
ILMN_3241953 6.255917398
ILMN_1735045 6.10041357
ILMN_1680754 6.073231799
ILMN_1659452 6.066336217
ILMN_1767388 6.0199952
ILMN_1755321 6.099019964
ILMN_1698554 6.234671729
ILMN_1814092 6.319178925
ILMN_2061446 7.128947563
ILMN_1676336 6.1769376
ILMN_1752884 6.036545255
ILMN_1668851 5.995479053
ILMN_1726986 6.049215231
ILMN_3237396 6.830621138
ILMN_1688755 7.903031787

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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